CN09_23100 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_23100

ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)

Predicted Functional Partners:

CN09_23105

0.991

CN09_23110

0.973

CN09_23095

0.916

CN09_33365

0.866

CN09_32190

0.864

CN09_31485

0.836

CN09_12905

0.833

CN09_00600

0.831

CN09_31960

0.826

CN09_15830

0.824

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00600	CN09_23100	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.831
CN09_00600	CN09_23110	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.675
CN09_12905	CN09_23100	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.833
CN09_12905	CN09_23110	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.486
CN09_15830	CN09_23100	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.824
CN09_15830	CN09_23110	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.598
CN09_23095	CN09_23100	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.916
CN09_23095	CN09_23105	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.957
CN09_23095	CN09_23110	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.832
CN09_23095	CN09_32190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.689
CN09_23095	CN09_33365	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.612
CN09_23100	CN09_00600	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.831
CN09_23100	CN09_12905	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.833
CN09_23100	CN09_15830	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.824
CN09_23100	CN09_23095	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.916
CN09_23100	CN09_23105	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991
CN09_23100	CN09_23110	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.973
CN09_23100	CN09_31485	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.836
CN09_23100	CN09_31960	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.826
CN09_23100	CN09_32190	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.864