STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23165Mannonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology (324 aa)    
Predicted Functional Partners:
CN09_23160
Probable 5-dehydro-4-deoxyglucarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family
 
   
 0.838
CN09_23170
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.780
CN09_23175
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.720
CN09_23155
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.613
CN09_23195
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.588
CN09_00455
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.587
CN09_23190
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.564
CN09_29980
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.528
CN09_23180
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.526
CN09_23790
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.523
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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