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CN09_23470 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23470" - Oxidoreductase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_23470Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)    
Predicted Functional Partners:
CN09_29105
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
 
          0.799
CN09_23475
Lipase; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
         
  0.797
CN09_06405
Xylose isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
 
   
  0.792
CN09_23440
Epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.756
CN09_23450
Myo-inositol catabolism protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.726
CN09_23445
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
 
       
0.650
CN09_23435
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
          0.629
CN09_23430
D-allulose-6-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
 
     
  0.620
CN09_03355
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
 
     
  0.606
CN09_23460
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
         
  0.590
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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