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CN09_23475 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_23475" - Lipase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_23475Lipase; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)    
Predicted Functional Partners:
CN09_23470
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
         
  0.797
CN09_10110
Cytochrome P450; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the cytochrome P450 family (414 aa)
 
 
  0.787
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine (496 aa)
   
   
  0.746
CN09_04120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
              0.725
CN09_25670
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
              0.717
CN09_12045
UPF0061 protein CN09_12045; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0061 (SELO) family (493 aa)
              0.714
CN09_23435
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
     
  0.698
CN09_23440
Epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
     
  0.684
CN09_23445
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
 
     
  0.681
CN09_23425
Glucokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
 
     
  0.625
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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