STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24030IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (251 aa)    
Predicted Functional Partners:
CN09_24040
3-oxoacid CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.921
CN09_24035
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.883
pcaG
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.839
pcaD
3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.838
pcaH
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.792
pcaF
Beta-ketoadipyl coa thiolase; Belongs to the thiolase-like superfamily. Thiolase family
 
   
 0.788
CN09_23990
3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.783
CN09_32240
mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.745
pobA
4-hydroxybenzoate 3-monooxygenase; Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.719
CN09_32265
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.674
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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