STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24280ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (221 aa)    
Predicted Functional Partners:
CN09_24285
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.972
CN09_24270
Abc transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family
  
 0.966
CN09_24275
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    
0.946
CN09_24295
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.859
CN09_21640
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.796
CN09_30990
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.790
CN09_31980
Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.789
CN09_31545
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.773
CN09_26760
Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.772
CN09_05245
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 0.771
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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