CN09_24710 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_24710

ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)

Predicted Functional Partners:

CN09_24715

0.974

CN09_24720

0.935

CN09_24705

0.899

CN09_30220

0.831

CN09_26705

0.805

CN09_26440

0.794

CN09_30170

0.788

CN09_33465

0.787

CN09_22905

0.785

CN09_23390

0.779

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_22905	CN09_24710	Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.785
CN09_22905	CN09_24720	Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.445
CN09_22905	CN09_30170	Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.411
CN09_23390	CN09_24710	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_23390	CN09_24720	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.492
CN09_24705	CN09_24710	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.899
CN09_24705	CN09_24715	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.884
CN09_24705	CN09_24720	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.731
CN09_24710	CN09_22905	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method- Protein Homology	0.785
CN09_24710	CN09_23390	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_24710	CN09_24705	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.899
CN09_24710	CN09_24715	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.974
CN09_24710	CN09_24720	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.935
CN09_24710	CN09_26440	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.794
CN09_24710	CN09_26705	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.805
CN09_24710	CN09_30170	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.788
CN09_24710	CN09_30220	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.831
CN09_24710	CN09_33465	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.787
CN09_24715	CN09_24705	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.884
CN09_24715	CN09_24710	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.974