STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24710ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (279 aa)    
Predicted Functional Partners:
CN09_24715
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.974
CN09_24720
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.935
CN09_24705
Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily
 
 
 0.899
CN09_30220
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.831
CN09_26705
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.805
CN09_26440
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.794
CN09_30170
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.788
CN09_33465
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.787
CN09_22905
Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.785
CN09_23390
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.779
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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