CN09_24760 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_24760

AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (252 aa)

Predicted Functional Partners:

CN09_24755

0.839

CN09_08740

0.682

CN09_02720

0.632

CN09_08750

0.610

CN09_24765

0.537

CN09_24770

0.537

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_02720	CN09_24760	Multidrug DMT transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.632
CN09_08740	CN09_08750	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_08740	CN09_24760	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.682
CN09_08750	CN09_08740	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.996
CN09_08750	CN09_24760	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.610
CN09_24755	CN09_24760	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.839
CN09_24755	CN09_24765	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.414
CN09_24755	CN09_24770	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.423
CN09_24760	CN09_02720	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Multidrug DMT transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.632
CN09_24760	CN09_08740	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.682
CN09_24760	CN09_08750	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.610
CN09_24760	CN09_24755	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.839
CN09_24760	CN09_24765	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_24760	CN09_24770	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_24765	CN09_24755	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.414
CN09_24765	CN09_24760	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_24765	CN09_24770	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.901
CN09_24770	CN09_24755	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.423
CN09_24770	CN09_24760	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_24770	CN09_24765	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.901