STRINGSTRING
CN09_24790 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24790" - Peptide ABC transporter permease in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24790Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)    
Predicted Functional Partners:
CN09_24785
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
  0.975
CN09_24780
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (541 aa)
 
   
  0.967
CN09_24795
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (559 aa)
 
 
  0.863
CN09_30090
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
  0.844
CN09_30275
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
 
  0.809
CN09_26420
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
  0.804
CN09_26440
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
  0.796
CN09_33465
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
  0.794
CN09_31440
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
  0.793
CN09_33420
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
  0.792
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (9%) [HD]