CN09_24900 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_24900

Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology (666 aa)

Predicted Functional Partners:

CN09_24905

0.733

CN09_12395

0.643

CN09_19725

0.580

CN09_15420

0.523

CN09_16715

0.459

CN09_22105

0.459

CN09_03125

0.452

CN09_06235

0.449

CN09_12930

0.447

CN09_10105

0.431

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 5

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03125	CN09_06235	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.420
CN09_03125	CN09_10105	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.455
CN09_03125	CN09_12395	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.924
CN09_03125	CN09_12930	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.866
CN09_03125	CN09_15420	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.865
CN09_03125	CN09_16715	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.437
CN09_03125	CN09_19725	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.951
CN09_03125	CN09_24900	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.452
CN09_06235	CN09_03125	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.420
CN09_06235	CN09_10105	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.429
CN09_06235	CN09_12395	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_06235	CN09_12930	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.792
CN09_06235	CN09_15420	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.654
CN09_06235	CN09_19725	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.891
CN09_06235	CN09_22105	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.420
CN09_06235	CN09_24900	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.449
CN09_10105	CN09_03125	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.455
CN09_10105	CN09_06235	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.429
CN09_10105	CN09_12395	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.920
CN09_10105	CN09_12930	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.824