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CN09_24930 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_24930" - RND transporter in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_24930RND transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)    
Predicted Functional Partners:
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (651 aa)
 
 
  0.994
CN09_24920
Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (430 aa)
 
  0.924
CN09_24925
Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (1044 aa)
 
  0.919
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
         
  0.818
CN09_22160
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology (713 aa)
 
     
  0.815
CN09_28865
Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (438 aa)
 
  0.789
CN09_28870
Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (1043 aa)
 
  0.772
CN09_25555
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (441 aa)
 
 
  0.764
CN09_28885
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (491 aa)
 
 
  0.753
CN09_02750
RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (394 aa)
 
 
  0.749
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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