STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25010NADPH dependend quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology (300 aa)    
Predicted Functional Partners:
CN09_24995
Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.996
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine
 
  
 0.996
CN09_25000
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.958
CN09_24990
Catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.926
CN09_25015
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.831
CN09_24985
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.830
CN09_15305
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.777
CN09_13770
Acetylpolyamine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.751
CN09_24975
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.719
CN09_06020
Acyl-CoA thioester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.693
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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