STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhaKWith DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology (338 aa)    
Predicted Functional Partners:
dhaL
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.998
CN09_30820
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.994
CN09_30805
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.979
CN09_22585
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.831
CN09_25100
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.727
CN09_25115
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.717
CN09_25120
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.704
CN09_25110
Sugar abc transporter permease; Belongs to the binding-protein-dependent transport system permease family
     
 0.703
CN09_25105
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.700
CN09_25085
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.624
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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