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CN09_25405 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25405" - D-amino acid oxidase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_25405D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (442 aa)    
Predicted Functional Partners:
CN09_25400
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M20A family. ArgE subfamily (374 aa)
 
          0.903
CN09_25410
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
     
  0.833
CN09_25395
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
        0.817
CN09_25350
Dehalogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
 
          0.774
CN09_25345
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
     
  0.739
CN09_25390
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
 
          0.737
CN09_25330
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (536 aa)
 
          0.711
CN09_25335
2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (238 aa)
 
          0.628
CN09_25325
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
        0.613
CN09_25320
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)
 
          0.612
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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