STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25465Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology (403 aa)    
Predicted Functional Partners:
CN09_25470
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.980
CN09_25520
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.928
CN09_25485
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.909
CN09_25510
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.873
CN09_25495
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.868
CN09_01860
D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily
     
 0.855
CN09_25490
Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.851
CN09_05430
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.837
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family
       0.831
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the KdsA family
       0.744
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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