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CN09_25800 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_25800" - 5,10-methylene tetrahydromethanopterin reductase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_258005,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)    
Predicted Functional Partners:
CN09_25810
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (493 aa)
     
      0.756
CN09_25820
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
   
  0.751
CN09_25805
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (355 aa)
              0.742
CN09_21025
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)
     
  0.683
CN09_30240
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (407 aa)
     
  0.677
CN09_32625
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (412 aa)
   
  0.613
CN09_32630
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
   
  0.603
CN09_30135
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (392 aa)
   
  0.602
CN09_25825
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (405 aa)
   
  0.600
CN09_05640
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (405 aa)
   
  0.600
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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