STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25830Quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology (777 aa)    
Predicted Functional Partners:
CN09_17085
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family
     
 0.852
pqqC
Pyrroloquinoline quinone biosynthesis protein pqqc; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ
 
   
 0.789
pqqB
Pyrroloquinoline quinone biosynthesis protein pqqb; May be involved in the transport of PQQ or its precursor to the periplasm
 
   
 0.727
pqqE
Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ)
 
   
 0.664
CN09_01095
Aromatic amino acid aminotransferase; Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.597
CN09_12530
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.561
CN09_25825
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.462
CN09_15935
Gluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology
      
 0.453
CN09_08610
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.426
CN09_20520
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.422
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (14%) [HD]