STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_25850ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (401 aa)    
Predicted Functional Partners:
CN09_25845
Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.726
CN09_25840
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.700
CN09_25855
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.681
CN09_25875
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.616
CN09_25865
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.537
CN09_25860
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.531
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PEP-utilizing enzyme family
   
 
 0.502
CN09_29325
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family
 
   
 0.488
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis
 
   
 0.466
CN09_32765
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
0.408
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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