CN09_25850 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_25850

ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (401 aa)

Predicted Functional Partners:

CN09_25845

0.726

CN09_25840

0.700

CN09_25855

0.681

CN09_25875

0.616

CN09_25865

0.537

CN09_25860

0.531

CN09_17085

0.502

CN09_29325

0.488

cutC

0.466

CN09_32765

0.408

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_17085	CN09_25850	CN09_17085	CN09_25850	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.502
CN09_17085	CN09_29325	CN09_17085	CN09_29325	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family	0.900
CN09_17085	CN09_32765	CN09_17085	CN09_32765	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.502
CN09_17085	cutC	CN09_17085	CN09_20095	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	Copper homeostasis protein CutC; Participates in the control of copper homeostasis	0.703
CN09_25840	CN09_25845	CN09_25840	CN09_25845	Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology	Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_25840	CN09_25850	CN09_25840	CN09_25850	Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.700
CN09_25845	CN09_25840	CN09_25845	CN09_25840	Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_25845	CN09_25850	CN09_25845	CN09_25850	Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.726
CN09_25845	CN09_25855	CN09_25845	CN09_25855	Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.435
CN09_25850	CN09_17085	CN09_25850	CN09_17085	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.502
CN09_25850	CN09_25840	CN09_25850	CN09_25840	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.700
CN09_25850	CN09_25845	CN09_25850	CN09_25845	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.726
CN09_25850	CN09_25855	CN09_25850	CN09_25855	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.681
CN09_25850	CN09_25860	CN09_25850	CN09_25860	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.531
CN09_25850	CN09_25865	CN09_25850	CN09_25865	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_25850	CN09_25875	CN09_25850	CN09_25875	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Beta-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.616
CN09_25850	CN09_29325	CN09_25850	CN09_29325	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family	0.488
CN09_25850	CN09_32765	CN09_25850	CN09_32765	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.408
CN09_25850	cutC	CN09_25850	CN09_20095	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Copper homeostasis protein CutC; Participates in the control of copper homeostasis	0.466
CN09_25855	CN09_25845	CN09_25855	CN09_25845	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.435

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About