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CN09_26085 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26085" - Calcium-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_26085Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1557 aa)    
Predicted Functional Partners:
CN09_26080
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
 
          0.966
CN09_26075
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
              0.931
CN09_26605
1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology (479 aa)
 
     
  0.874
CN09_26090
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
              0.851
CN09_26070
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
              0.841
CN09_26065
Invasion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)
 
          0.758
CN09_22860
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
          0.737
CN09_22865
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
          0.690
CN09_20395
Urease-associated protein; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)
   
          0.643
CN09_06175
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (842 aa)
 
   
  0.629
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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