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CN09_26560 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26560" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
CN09_26560ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial solute-binding protein 3 family (285 aa)    
Predicted Functional Partners:
CN09_26545
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
 
  0.980
CN09_26550
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
     
  0.954
CN09_26555
Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
   
  0.936
CN09_19005
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
 
 
  0.861
CN09_19000
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
     
  0.785
CN09_06165
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
 
 
  0.725
CN09_06160
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
     
  0.702
CN09_26535
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (474 aa)
 
          0.617
CN09_31550
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
   
  0.600
CN09_31555
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
   
  0.593
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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