CN09_26560 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_26560

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family (285 aa)

Predicted Functional Partners:

CN09_26545

0.980

CN09_26550

0.954

CN09_26555

0.936

CN09_19005

0.861

CN09_19000

0.785

CN09_06165

0.725

CN09_06160

0.702

CN09_26535

0.617

CN09_31550

0.600

CN09_31555

0.593

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_06160	CN09_06165	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.937
CN09_06160	CN09_19005	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.725
CN09_06160	CN09_26545	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.622
CN09_06160	CN09_26555	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.818
CN09_06160	CN09_26560	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.702
CN09_06165	CN09_06160	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.937
CN09_06165	CN09_19000	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.521
CN09_06165	CN09_26550	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.609
CN09_06165	CN09_26555	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.810
CN09_06165	CN09_26560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.725
CN09_19000	CN09_06165	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.521
CN09_19000	CN09_19005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.926
CN09_19000	CN09_26545	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.537
CN09_19000	CN09_26555	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.837
CN09_19000	CN09_26560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.785
CN09_19005	CN09_06160	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.725
CN09_19005	CN09_19000	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.926
CN09_19005	CN09_26550	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.714
CN09_19005	CN09_26555	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.943
CN09_19005	CN09_26560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.861