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CN09_26715 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_26715" - AsnC family transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_26715AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)    
Predicted Functional Partners:
CN09_32300
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
   
          0.750
CN09_12750
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
   
          0.740
CN09_26425
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
   
          0.720
CN09_21180
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
     
  0.677
CN09_32680
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
 
     
  0.621
CN09_19930
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
     
  0.574
CN09_26710
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (503 aa)
              0.571
CN09_07580
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
 
     
  0.548
CN09_26910
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
     
  0.545
CN09_00455
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
 
     
  0.541
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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