STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_27370MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (432 aa)    
Predicted Functional Partners:
mtgA
Peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
       0.749
CN09_27365
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.694
CN09_12230
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.644
fucP
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.468
CN09_29470
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.468
CN09_08520
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.464
CN09_01270
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.462
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose
  
  
 0.462
CN09_24995
Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.460
CN09_00175
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.451
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (8%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >