CN09_27865 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_27865

Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)

Predicted Functional Partners:

CN09_27860

0.759

CN09_27850

0.716

CN09_04795

0.628

CN09_27855

0.611

CN09_24935

0.605

CN09_27310

0.589

CN09_03180

0.561

CN09_07205

0.554

CN09_31800

0.553

CN09_31775

0.538

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 2

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03180	CN09_04795	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.654
CN09_03180	CN09_27850	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	0.456
CN09_03180	CN09_27865	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.561
CN09_04795	CN09_03180	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.654
CN09_04795	CN09_27850	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	0.493
CN09_04795	CN09_27865	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.628
CN09_07205	CN09_27865	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.554
CN09_24935	CN09_27865	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.605
CN09_27310	CN09_27865	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.589
CN09_27850	CN09_03180	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.456
CN09_27850	CN09_04795	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.493
CN09_27850	CN09_27855	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family	0.835
CN09_27850	CN09_27860	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.885
CN09_27850	CN09_27865	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.716
CN09_27855	CN09_27850	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	0.835
CN09_27855	CN09_27860	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.876
CN09_27855	CN09_27865	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.611
CN09_27860	CN09_27850	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family	0.885
CN09_27860	CN09_27855	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aldehyde dehydrogenase family	0.876
CN09_27860	CN09_27865	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759