CN09_28040 protein (Agrobacterium rhizogenes)

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Score

CN09_28040

Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (143 aa)

Predicted Functional Partners:

gpsA

0.985

tsaD

0.985

CN09_28045

0.963

CN09_28035

0.938

CN09_18560

0.879

hemC

0.870

CN09_28075

0.830

CN09_28065

0.822

ccmC

0.778

CN09_28070

0.776

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_18560	CN09_28040	CN09_18560	CN09_28040	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.879
CN09_28035	CN09_28040	CN09_28035	CN09_28040	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.938
CN09_28035	CN09_28045	CN09_28035	CN09_28045	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method- Protein Homology	0.938
CN09_28035	CN09_28065	CN09_28035	CN09_28065	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uroporphyrinogen III synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.753
CN09_28035	CN09_28070	CN09_28035	CN09_28070	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.500
CN09_28035	CN09_28075	CN09_28035	CN09_28075	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.545
CN09_28035	gpsA	CN09_28035	CN09_28050	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Derived by automated computational analysis using gene prediction method- Protein Homology	0.914
CN09_28035	hemC	CN09_28035	CN09_28060	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps; Belongs to the HMBS family	0.795
CN09_28035	tsaD	CN09_28035	CN09_28055	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	0.914
CN09_28040	CN09_18560	CN09_28040	CN09_18560	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.879
CN09_28040	CN09_28035	CN09_28040	CN09_28035	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.938
CN09_28040	CN09_28045	CN09_28040	CN09_28045	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method- Protein Homology	0.963
CN09_28040	CN09_28065	CN09_28040	CN09_28065	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uroporphyrinogen III synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.822
CN09_28040	CN09_28070	CN09_28040	CN09_28070	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_28040	CN09_28075	CN09_28040	CN09_28075	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.830
CN09_28040	ccmC	CN09_28040	CN09_28250	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes	0.778
CN09_28040	gpsA	CN09_28040	CN09_28050	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Derived by automated computational analysis using gene prediction method- Protein Homology	0.985
CN09_28040	hemC	CN09_28040	CN09_28060	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps; Belongs to the HMBS family	0.870
CN09_28040	tsaD	CN09_28040	CN09_28055	Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	0.985
CN09_28045	CN09_28035	CN09_28045	CN09_28035	Uncharacterized protein; Unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.938

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