CN09_28080 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CN09_28080

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)

Predicted Functional Partners:

CN09_28085

0.954

CN09_28075

0.929

CN09_28070

0.864

CN09_29405

0.774

CN09_29395

0.744

CN09_29390

0.744

CN09_26555

0.744

CN09_29400

0.730

rlmJ

0.724

CN09_15175

0.662

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_15175	CN09_26555	CN09_15175	CN09_26555	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.768
CN09_15175	CN09_28080	CN09_15175	CN09_28080	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.662
CN09_26555	CN09_15175	CN09_26555	CN09_15175	Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.768
CN09_26555	CN09_28080	CN09_26555	CN09_28080	Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_28070	CN09_28075	CN09_28070	CN09_28075	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_28070	CN09_28080	CN09_28070	CN09_28080	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.864
CN09_28070	CN09_28085	CN09_28070	CN09_28085	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamine amidotransferase; Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_28075	CN09_28070	CN09_28075	CN09_28070	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_28075	CN09_28080	CN09_28075	CN09_28080	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.929
CN09_28075	CN09_28085	CN09_28075	CN09_28085	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamine amidotransferase; Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; Derived by automated computational analysis using gene prediction method- Protein Homology	0.908
CN09_28080	CN09_15175	CN09_28080	CN09_15175	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.662
CN09_28080	CN09_26555	CN09_28080	CN09_26555	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_28080	CN09_28070	CN09_28080	CN09_28070	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.864
CN09_28080	CN09_28075	CN09_28080	CN09_28075	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.929
CN09_28080	CN09_28085	CN09_28080	CN09_28085	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamine amidotransferase; Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_28080	CN09_29390	CN09_28080	CN09_29390	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	CarD family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_28080	CN09_29395	CN09_28080	CN09_29395	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions	0.744
CN09_28080	CN09_29400	CN09_28080	CN09_29400	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA-binding protein S4; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_28080	CN09_29405	CN09_28080	CN09_29405	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.774
CN09_28080	rlmJ	CN09_28080	CN09_10535	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribosomal RNA large subunit methyltransferase J; Specifically methylates the adenine in position 2030 of 23S rRNA	0.724

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