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CN09_28440 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_28440" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28440Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)    
Predicted Functional Partners:
CN09_28445
Protein kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (151 aa)
     
 
  0.960
CN09_28435
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
 
          0.907
CN09_14855
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (506 aa)
 
     
  0.888
CN09_04330
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
 
 
  0.858
CN09_17770
Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis (219 aa)
              0.740
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (763 aa)
   
 
  0.685
CN09_15095
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
 
  0.680
CN09_11820
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
 
 
  0.621
CN09_10930
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
 
          0.621
CN09_28450
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
     
 
  0.589
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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