STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28595Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (281 aa)    
Predicted Functional Partners:
CN09_28570
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.745
CN09_30800
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.630
CN09_00575
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.611
CN09_28590
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.592
CN09_28600
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.578
CN09_28585
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.497
CN09_28605
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
       0.470
CN09_28580
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
     0.458
CN09_04460
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.437
CN09_28575
ACR/RND family transmembrane transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
 
     0.424
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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