CN09_28650 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_28650

Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (142 aa)

Predicted Functional Partners:

CN09_28655

0.984

CN09_28675

0.982

CN09_28670

0.976

CN09_28660

0.975

CN09_28665

0.967

CN09_28680

0.963

CN09_28685

0.956

CN09_28690

0.869

CN09_28645

0.864

CN09_08645

0.750

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_08645	CN09_28650	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.750
CN09_08645	CN09_28655	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.665
CN09_08645	CN09_28665	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.672
CN09_08645	CN09_28670	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.536
CN09_08645	CN09_28675	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.651
CN09_08645	CN09_28690	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.563
CN09_28645	CN09_28650	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.864
CN09_28645	CN09_28655	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.855
CN09_28645	CN09_28660	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.851
CN09_28645	CN09_28665	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.864
CN09_28645	CN09_28670	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.864
CN09_28645	CN09_28675	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.854
CN09_28645	CN09_28680	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	0.853
CN09_28645	CN09_28685	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.799
CN09_28645	CN09_28690	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.572
CN09_28650	CN09_08645	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.750
CN09_28650	CN09_28645	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.864
CN09_28650	CN09_28655	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.984
CN09_28650	CN09_28660	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.975
CN09_28650	CN09_28665	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.967