STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28775Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology (400 aa)    
Predicted Functional Partners:
glgB
Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
  
 0.977
CN09_02360
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.969
CN09_15705
N-acetyl mannosamine transferase; Belongs to the glycosyltransferase 26 family
 
 
 0.943
CN09_13610
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.916
CN09_13615
Belongs to the glycosyl hydrolase 5 (cellulase A) family
 
  
 0.907
CN09_04725
Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.840
CN09_28785
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.793
CN09_23675
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.777
CN09_10215
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.710
CN09_01855
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.689
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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