CN09_28805 protein (Agrobacterium rhizogenes)

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Score

CN09_28805

DNA helicase; Unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology (237 aa)

Predicted Functional Partners:

CN09_19725

0.817

recA

0.816

pleD

0.779

fusA

0.649

dnaG

0.619

recG

0.604

CN09_06510

0.549

CN09_03650

0.547

CN09_00240

0.498

CN09_22160

0.489

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00240	CN09_03650	CN09_00240	CN09_03650	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_00240	CN09_06510	CN09_00240	CN09_06510	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.974
CN09_00240	CN09_19725	CN09_00240	CN09_19725	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.996
CN09_00240	CN09_22160	CN09_00240	CN09_22160	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology	0.816
CN09_00240	CN09_28805	CN09_00240	CN09_28805	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA helicase; Unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.498
CN09_00240	pleD	CN09_00240	CN09_09855	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_03650	CN09_00240	CN09_03650	CN09_00240	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_03650	CN09_06510	CN09_03650	CN09_06510	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.692
CN09_03650	CN09_19725	CN09_03650	CN09_19725	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_03650	CN09_28805	CN09_03650	CN09_28805	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA helicase; Unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.547
CN09_03650	fusA	CN09_03650	CN09_08910	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome	0.428
CN09_03650	pleD	CN09_03650	CN09_09855	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_03650	recA	CN09_03650	CN09_06535	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	0.847
CN09_06510	CN09_00240	CN09_06510	CN09_00240	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.974
CN09_06510	CN09_03650	CN09_06510	CN09_03650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.692
CN09_06510	CN09_19725	CN09_06510	CN09_19725	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.929
CN09_06510	CN09_22160	CN09_06510	CN09_22160	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology	0.863
CN09_06510	CN09_28805	CN09_06510	CN09_28805	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA helicase; Unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.549
CN09_06510	dnaG	CN09_06510	CN09_04510	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication; Belongs to the DnaG primase family	0.405
CN09_06510	pleD	CN09_06510	CN09_09855	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology	0.998

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