STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_28905Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (246 aa)    
Predicted Functional Partners:
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family
       0.836
CN09_01390
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.670
CN09_28900
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.542
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
     
 0.539
CN09_28895
Copper ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.514
CN09_22330
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.495
CN09_06545
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.485
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP
  
 
 0.481
CN09_34320
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.470
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.462
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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