CN09_29050 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_29050

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (762 aa)

Predicted Functional Partners:

CN09_29060

0.990

CN09_29055

0.983

CN09_27725

0.920

CN09_18840

0.906

CN09_31185

0.905

CN09_20515

0.893

CN09_18845

0.888

CN09_31190

0.887

CN09_06755

0.759

CN09_27715

0.724

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Browse interactions in tabular form:

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Coexpression

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node1	node2	node1 annotation	node2 annotation	score
CN09_06755	CN09_18840	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.824
CN09_06755	CN09_18845	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.465
CN09_06755	CN09_20515	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.840
CN09_06755	CN09_27715	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.925
CN09_06755	CN09_27725	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.943
CN09_06755	CN09_29050	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_06755	CN09_29055	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_06755	CN09_29060	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.803
CN09_06755	CN09_31185	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.823
CN09_18840	CN09_06755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.824
CN09_18840	CN09_18845	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.976
CN09_18840	CN09_27715	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.644
CN09_18840	CN09_29050	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.906
CN09_18840	CN09_29055	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_18840	CN09_31190	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.850
CN09_18845	CN09_06755	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.465
CN09_18845	CN09_18840	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.976
CN09_18845	CN09_20515	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.464
CN09_18845	CN09_27725	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.560
CN09_18845	CN09_29050	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.888