CN09_29095 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_29095

ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)

Predicted Functional Partners:

cpsB

0.924

CN09_01825

0.864

CN09_29100

0.829

CN09_17085

0.824

CN09_29090

0.824

CN09_03380

0.810

CN09_29105

0.801

topA

0.721

CN09_26030

0.718

nnrD

0.712

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01825	CN09_03380	CN09_01825	CN09_03380	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.912
CN09_01825	CN09_17085	CN09_01825	CN09_17085	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.922
CN09_01825	CN09_26030	CN09_01825	CN09_26030	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01825	CN09_29095	CN09_01825	CN09_29095	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.864
CN09_01825	cpsB	CN09_01825	CN09_01720	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family	0.744
CN09_01825	nnrD	CN09_01825	CN09_07485	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family	0.912
CN09_01825	topA	CN09_01825	CN09_09825	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...]	0.945
CN09_03380	CN09_01825	CN09_03380	CN09_01825	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.912
CN09_03380	CN09_17085	CN09_03380	CN09_17085	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.999
CN09_03380	CN09_26030	CN09_03380	CN09_26030	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.943
CN09_03380	CN09_29095	CN09_03380	CN09_29095	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.810
CN09_03380	cpsB	CN09_03380	CN09_01720	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family	0.999
CN09_03380	nnrD	CN09_03380	CN09_07485	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family	0.949
CN09_03380	topA	CN09_03380	CN09_09825	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...]	0.917
CN09_17085	CN09_01825	CN09_17085	CN09_01825	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.922
CN09_17085	CN09_03380	CN09_17085	CN09_03380	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_17085	CN09_26030	CN09_17085	CN09_26030	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.875
CN09_17085	CN09_29095	CN09_17085	CN09_29095	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.824
CN09_17085	cpsB	CN09_17085	CN09_01720	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family	0.999
CN09_17085	topA	CN09_17085	CN09_09825	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...]	0.741

page 1 of 4

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About