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CN09_29170 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29170" - 2-hydroxyacid dehydrogenase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_291702-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)    
Predicted Functional Partners:
CN09_29160
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
 
          0.999
CN09_29165
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (618 aa)
 
          0.974
CN09_29155
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (431 aa)
 
          0.826
CN09_02455
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine (392 aa)
 
 
  0.719
CN09_29220
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (356 aa)
 
     
  0.608
CN09_32860
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
     
  0.600
CN09_32850
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
          0.597
CN09_29190
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
 
     
  0.594
CN09_22605
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
 
          0.556
CN09_32855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
   
  0.553
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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