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CN09_29360 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29360" - MFS transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29360MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (511 aa)    
Predicted Functional Partners:
CN09_29355
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (166 aa)
 
     
  0.718
CN09_29370
Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (546 aa)
              0.465
tbpA
Thiamine ABC transporter substrate-binding protein; Part of the thiamine and TPP transport system tbpA-thiPQ; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
              0.462
thiQ
Thiamine import ATP-binding protein ThiQ; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system (242 aa)
              0.447
CN09_29350
Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (217 aa)
   
   
  0.429
CN09_29345
Elongation factor 3; Derived by automated computational analysis using gene prediction method- Protein Homology (609 aa)
         
  0.419
CN09_06935
Molecular chaperone; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)
 
     
  0.411
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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