STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29380Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology (535 aa)    
Predicted Functional Partners:
CN09_21195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.864
CN09_07195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.839
xerD
Tyrosine recombinase XerD; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
accA
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA
       0.719
CN09_15220
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.691
CN09_01180
CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.673
CN09_14535
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.672
CN09_29370
Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.661
CN09_11890
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
   
 0.659
rpmE
50S ribosomal protein L31; Binds the 23S rRNA
       0.652
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (12%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >