CN09_29380 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Predicted Interactions

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protein homology

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Score

CN09_29380

Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)

Predicted Functional Partners:

CN09_21195

0.864

CN09_07195

0.839

xerD

0.744

accA

0.719

CN09_15220

0.691

CN09_01180

0.673

CN09_14535

0.672

CN09_29370

0.661

CN09_11890

0.659

rpmE

0.652

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01180	CN09_11890	CN09_01180	CN09_11890	CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.512
CN09_01180	CN09_14535	CN09_01180	CN09_14535	CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.641
CN09_01180	CN09_15220	CN09_01180	CN09_15220	CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.657
CN09_01180	CN09_29380	CN09_01180	CN09_29380	CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.673
CN09_07195	CN09_21195	CN09_07195	CN09_21195	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.506
CN09_07195	CN09_29380	CN09_07195	CN09_29380	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.839
CN09_11890	CN09_01180	CN09_11890	CN09_01180	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology	0.512
CN09_11890	CN09_14535	CN09_11890	CN09_14535	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.760
CN09_11890	CN09_15220	CN09_11890	CN09_15220	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.764
CN09_11890	CN09_29380	CN09_11890	CN09_29380	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.659
CN09_14535	CN09_01180	CN09_14535	CN09_01180	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology	0.641
CN09_14535	CN09_11890	CN09_14535	CN09_11890	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.760
CN09_14535	CN09_15220	CN09_14535	CN09_15220	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750
CN09_14535	CN09_29380	CN09_14535	CN09_29380	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.672
CN09_15220	CN09_01180	CN09_15220	CN09_01180	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology	0.657
CN09_15220	CN09_11890	CN09_15220	CN09_11890	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.764
CN09_15220	CN09_14535	CN09_15220	CN09_14535	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750
CN09_15220	CN09_29380	CN09_15220	CN09_29380	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.691
CN09_21195	CN09_07195	CN09_21195	CN09_07195	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.506
CN09_21195	CN09_29380	CN09_21195	CN09_29380	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.864

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