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CN09_30320 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30320" - RNA polymerase sigma factor in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30320RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (167 aa)    
Predicted Functional Partners:
CN09_30315
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
 
  0.947
CN09_23245
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
 
  0.851
CN09_30330
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
         
  0.732
CN09_30325
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (61 aa)
              0.727
CN09_30310
Ferrichrome-iron receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (717 aa)
 
     
  0.568
CN09_30335
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
         
  0.543
ispDF
Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (406 aa)
              0.528
CN09_30305
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
 
          0.504
CN09_30340
Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
         
  0.502
CN09_30345
Hydroxypyruvate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (422 aa)
              0.484
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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