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CN09_30330 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30330" - Transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
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[Homology]
Score
CN09_30330Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)    
Predicted Functional Partners:
CN09_04920
Methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
   
  0.959
CN09_30325
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (61 aa)
              0.845
CN09_30320
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (167 aa)
         
  0.732
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide (394 aa)
   
   
  0.725
CN09_30335
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
 
 
 
  0.723
metAA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine; Belongs to the MetA family (308 aa)
   
   
  0.706
CN09_30340
Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
 
     
  0.706
CN09_18425
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.649
CN09_02110
Inositol-1-monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the inositol monophosphatase superfamily (267 aa)
   
        0.632
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (120 aa)
         
  0.606
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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