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CN09_30685 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30685" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30685ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (588 aa)    
Predicted Functional Partners:
CN09_00240
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
         
  0.992
CN09_30690
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (562 aa)
 
 
0.982
CN09_30680
HTH-type transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GbsR family (196 aa)
 
          0.969
CN09_30705
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (37 aa)
 
     
  0.961
CN09_30700
Cytochrome d ubiquinol oxidase subunit 2; Derived by automated computational analysis using gene prediction method- Protein Homology (384 aa)
 
 
  0.950
CN09_30695
Cytochrome d terminal oxidase subunit 1; Part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method- Protein Homology (533 aa)
 
 
  0.948
CN09_05535
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (420 aa)
         
  0.663
CN09_04425
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (324 aa)
         
  0.648
CN09_04515
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method- Protein Homology (626 aa)
              0.629
CN09_01180
CysZ-like protein; Role in sulfur assimilation; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
              0.609
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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