STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31025Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology (332 aa)    
Predicted Functional Partners:
CN09_31030
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.994
CN09_31020
UPF0271 protein CN09_31020; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0271 (lamB) family
  
 0.979
CN09_21685
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.977
CN09_21690
UPF0271 protein CN09_21690; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0271 (lamB) family
  
 0.939
CN09_32955
UPF0271 protein CN09_32955; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0271 (lamB) family
  
 0.939
CN09_30970
LamB/YcsF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0271 (lamB) family
  
 0.935
CN09_31035
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.918
CN09_31040
Acetyl-CoA carboxylase; An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.910
CN09_31045
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
       0.877
CN09_30955
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.843
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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