CN09_31135 protein (Agrobacterium rhizogenes)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

CN09_31135

Peptidase C39; Derived by automated computational analysis using gene prediction method- Protein Homology (710 aa)

Predicted Functional Partners:

CN09_31130

0.999

CN09_26605

0.911

CN09_31905

0.881

CN09_26610

0.881

CN09_15290

0.821

polA

0.796

CN09_13840

0.704

CN09_13430

0.680

guaA

0.678

ybeY

0.652

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_13430	CN09_31135	CN09_13430	CN09_31135	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family	Peptidase C39; Derived by automated computational analysis using gene prediction method- Protein Homology	0.680
CN09_13430	guaA	CN09_13430	CN09_14055	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.999
CN09_13430	ybeY	CN09_13430	CN09_14665	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA	0.907
CN09_13840	CN09_15290	CN09_13840	CN09_15290	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.948
CN09_13840	CN09_31135	CN09_13840	CN09_31135	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase C39; Derived by automated computational analysis using gene prediction method- Protein Homology	0.704
CN09_15290	CN09_13840	CN09_15290	CN09_13840	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.948
CN09_15290	CN09_26605	CN09_15290	CN09_26605	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.956
CN09_15290	CN09_26610	CN09_15290	CN09_26610	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method- Protein Homology	0.417
CN09_15290	CN09_31130	CN09_15290	CN09_31130	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.417
CN09_15290	CN09_31135	CN09_15290	CN09_31135	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase C39; Derived by automated computational analysis using gene prediction method- Protein Homology	0.821
CN09_15290	CN09_31905	CN09_15290	CN09_31905	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method- Protein Homology	0.417
CN09_15290	guaA	CN09_15290	CN09_14055	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.999
CN09_15290	polA	CN09_15290	CN09_13050	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.999
CN09_15290	ybeY	CN09_15290	CN09_14665	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA	0.978
CN09_26605	CN09_15290	CN09_26605	CN09_15290	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.956
CN09_26605	CN09_26610	CN09_26605	CN09_26610	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method- Protein Homology	0.583
CN09_26605	CN09_31135	CN09_26605	CN09_31135	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase C39; Derived by automated computational analysis using gene prediction method- Protein Homology	0.911
CN09_26605	CN09_31905	CN09_26605	CN09_31905	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method- Protein Homology	0.579
CN09_26610	CN09_15290	CN09_26610	CN09_15290	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.417
CN09_26610	CN09_26605	CN09_26610	CN09_26605	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method- Protein Homology	1,3-1,4-beta-glycanase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.583

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