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CN09_31535 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31535" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31535Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)    
Predicted Functional Partners:
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
         
  0.984
CN09_31540
Aminotransferase class IV; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
 
     
  0.882
CN09_31550
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
         
  0.867
CN09_31545
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
              0.857
CN09_31555
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
         
  0.854
CN09_17885
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the HpcH/HpaI aldolase family (304 aa)
 
   
  0.787
CN09_14355
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)
 
        0.765
CN09_31560
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
          0.761
CN09_00260
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (470 aa)
   
   
  0.735
CN09_07985
Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
         
  0.731
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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