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CN09_31870 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31870" - (2Fe-2S)-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31870(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (475 aa)    
Predicted Functional Partners:
CN09_31875
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
 
 
  0.967
CN09_31880
Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DapA family (313 aa)
            0.871
CN09_31885
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (229 aa)
              0.866
CN09_19020
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
 
   
  0.835
CN09_19010
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
 
  0.827
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.755
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
         
  0.746
CN09_01640
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)
 
 
  0.620
CN09_33435
D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
 
  0.618
CN09_03005
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)
 
 
  0.610
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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