CN09_31970 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_31970

Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family (269 aa)

Predicted Functional Partners:

CN09_31975

0.958

CN09_31980

0.898

CN09_23545

0.772

CN09_31995

0.770

CN09_21635

0.766

CN09_31855

0.765

CN09_31680

0.762

CN09_31985

0.762

CN09_31990

0.754

glnP

0.745

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_21635	CN09_31970	CN09_21635	CN09_31970	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.766
CN09_21635	CN09_31980	CN09_21635	CN09_31980	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology	0.815
CN09_23545	CN09_31970	CN09_23545	CN09_31970	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.772
CN09_23545	CN09_31980	CN09_23545	CN09_31980	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology	0.807
CN09_31680	CN09_31970	CN09_31680	CN09_31970	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.762
CN09_31680	CN09_31980	CN09_31680	CN09_31980	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology	0.811
CN09_31855	CN09_31970	CN09_31855	CN09_31970	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.765
CN09_31855	CN09_31980	CN09_31855	CN09_31980	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology	0.809
CN09_31970	CN09_21635	CN09_31970	CN09_21635	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.766
CN09_31970	CN09_23545	CN09_31970	CN09_23545	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.772
CN09_31970	CN09_31680	CN09_31970	CN09_31680	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.762
CN09_31970	CN09_31855	CN09_31970	CN09_31855	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.765
CN09_31970	CN09_31975	CN09_31970	CN09_31975	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.958
CN09_31970	CN09_31980	CN09_31970	CN09_31980	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology	0.898
CN09_31970	CN09_31985	CN09_31970	CN09_31985	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.762
CN09_31970	CN09_31990	CN09_31970	CN09_31990	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.754
CN09_31970	CN09_31995	CN09_31970	CN09_31995	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.770
CN09_31970	glnP	CN09_31970	CN09_32360	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	Similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology	0.745
CN09_31975	CN09_31970	CN09_31975	CN09_31970	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.958
CN09_31975	CN09_31980	CN09_31975	CN09_31980	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology	0.966

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About