CN09_32425 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_32425

AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)

Predicted Functional Partners:

CN09_32430

0.755

CN09_32435

0.680

CN09_19850

0.448

CN09_29725

0.444

CN09_20430

0.439

CN09_13260

0.428

CN09_01160

0.409

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01160	CN09_29725	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.841
CN09_01160	CN09_32425	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.409
CN09_01160	CN09_32430	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology	0.721
CN09_01160	CN09_32435	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.920
CN09_13260	CN09_32425	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.428
CN09_19850	CN09_32425	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.448
CN09_20430	CN09_32425	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.439
CN09_29725	CN09_01160	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	0.841
CN09_29725	CN09_32425	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.444
CN09_29725	CN09_32430	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology	0.749
CN09_29725	CN09_32435	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.851
CN09_32425	CN09_01160	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	0.409
CN09_32425	CN09_13260	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.428
CN09_32425	CN09_19850	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.448
CN09_32425	CN09_20430	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.439
CN09_32425	CN09_29725	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.444
CN09_32425	CN09_32430	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755
CN09_32425	CN09_32435	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.680
CN09_32430	CN09_01160	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	0.721
CN09_32430	CN09_29725	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.749