Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rnc | rplM | BAB1_0681 | BAB1_0811 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.984 |
| rnc | rplQ | BAB1_0681 | BAB1_1230 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein L17. | 0.979 |
| rnc | rplS | BAB1_0681 | BAB1_1906 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.985 |
| rnc | rpmF | BAB1_0681 | BAB1_1785 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal L32p protein:Ribosomal protein S32, bacterial and organelle form; Belongs to the bacterial ribosomal protein bL32 family. | 0.981 |
| rnc | rpsB | BAB1_0681 | BAB1_1184 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.979 |
| rnc | rpsF | BAB1_0681 | BAB1_0480 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.983 |
| rnc | rpsI | BAB1_0681 | BAB1_0810 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.985 |
| rnc | rpsJ | BAB1_0681 | BAB1_1256 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein S10:Ribosomal protein S10, bacterial form; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.979 |
| rnc | rpsO | BAB1_0681 | BAB1_2168 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein S15:Ribosomal protein S15, bacterial chloroplast and mitochondrial type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.982 |
| rnc | rpsP | BAB1_0681 | BAB1_1832 | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Antifreeze protein, type I:Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.979 |
| rplM | rnc | BAB1_0811 | BAB1_0681 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.984 |
| rplM | rplQ | BAB1_0811 | BAB1_1230 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L17. | 0.999 |
| rplM | rplS | BAB1_0811 | BAB1_1906 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| rplM | rpmF | BAB1_0811 | BAB1_1785 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal L32p protein:Ribosomal protein S32, bacterial and organelle form; Belongs to the bacterial ribosomal protein bL32 family. | 0.998 |
| rplM | rpsB | BAB1_0811 | BAB1_1184 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S2:Ribosomal protein S2, bacterial and organelle form; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| rplM | rpsF | BAB1_0811 | BAB1_0480 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.998 |
| rplM | rpsI | BAB1_0811 | BAB1_0810 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rplM | rpsJ | BAB1_0811 | BAB1_1256 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S10:Ribosomal protein S10, bacterial form; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| rplM | rpsO | BAB1_0811 | BAB1_2168 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S15:Ribosomal protein S15, bacterial chloroplast and mitochondrial type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
| rplM | rpsP | BAB1_0811 | BAB1_1832 | Ribosomal protein L13:Ribosomal protein L13, bacterial and organelle form; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Antifreeze protein, type I:Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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