STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAB1_1384ATP-dependent DNA ligase. (252 aa)    
Predicted Functional Partners:
cbiM
Cobalamin (vitamin B12) biosynthesis CbiM protein.
  
 0.990
BAB1_1388
ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
  
 0.988
BAB1_1387
Cobalt transport protein.
 
  
 0.978
BAB1_1386
Conserved hypothetical protein.
 
  
  0.974
BAB1_1383
Urea transporter.
     
 0.757
ureD-2
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter; Belongs to the UreD family.
 
     0.717
ureF2
UreE urease accessory, N-terminal; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter; Belongs to the UreF family.
 
     0.690
BAB2_0224
Conserved hypothetical protein.
  
  
 0.688
ureG2
Urease accessory protein UreG 2; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
       0.678
crcB-2
Camphor resistance CrcB protein:Domain of unknown function DUF302; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
      
 0.613
Your Current Organism:
Brucella abortus
NCBI taxonomy Id: 359391
Other names: B. abortus 2308, Brucella abortus 2308, Brucella melitensis biovar Abortus 2308
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