STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAB1_1406ATP/GTP-binding site motif A (P-loop). (373 aa)    
Predicted Functional Partners:
BAB1_2105
UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop); Belongs to the helicase family. UvrD subfamily.
  
 
 0.989
dnaN
DNA polymerase III, beta chain:Inorganic pyrophosphatase; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is re [...]
  
 
 0.943
BAB1_1432
UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop).
  
 
 0.858
truB
Pseudouridylate synthase TruB, N-terminal:tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
 
  0.848
BAB1_1092
Conserved hypothetical protein.
  
     0.731
BAB1_0587
Cyanate transport protein CynX.
  
     0.706
BAB1_0438
Conserved hypothetical protein.
  
     0.701
BAB1_1043
Unnamed protein product.
  
     0.678
BAB1_1693
Basic-leucine zipper (bZIP) transcription factor.
  
     0.676
BAB1_1029
Conserved hypothetical protein.
  
     0.659
Your Current Organism:
Brucella abortus
NCBI taxonomy Id: 359391
Other names: B. abortus 2308, Brucella abortus 2308, Brucella melitensis biovar Abortus 2308
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