Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
omp10Lipoprotein Omp10. (126 aa)    
Predicted Functional Partners:
BAB2_0077
Homospermidine synthase.
       0.627
omp19
Lipoprotein Omp19; Belongs to the rhizobiaceae omp19 lipoprotein family.
      
 0.619
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.490
omp28
Immunoreactive 28 kDa outer membrane protein.
      
 0.466
omp2b
ATP/GTP-binding site motif A (P-loop):Porin, alpha proteobacteria type; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
      
 0.446
Your Current Organism:
Brucella abortus
NCBI taxonomy Id: 359391
Other names: B. abortus 2308, Brucella abortus 2308, Brucella melitensis biovar Abortus 2308
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