Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAB2_0342Conserved hypothetical protein. (180 aa)    
Predicted Functional Partners:
BAB2_0341
Conserved hypothetical protein.
       0.773
trx-2
Thioredoxin:Thioredoxin type domain:Thioredoxin domain 2.
       0.583
BAB1_0795
Ubiquinol-cytochrome C chaperone.
  
     0.570
BAB2_0345
Protein of unknown function DUF343; Belongs to the UPF0434 family.
 
     0.536
BAB2_0344
ATP-dependent protease La, LON.
       0.521
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.445
BAB2_0340
Conserved hypothetical protein.
       0.436
Your Current Organism:
Brucella abortus
NCBI taxonomy Id: 359391
Other names: B. abortus 2308, Brucella abortus 2308, Brucella melitensis biovar Abortus 2308
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